{"id":1223,"date":"2018-10-12T17:51:16","date_gmt":"2018-10-12T17:51:16","guid":{"rendered":"https:\/\/www.vanderbilt.edu\/csb\/?page_id=1223"},"modified":"2024 ÎåÒ»²è¹Ý¶ù-09-23T14:51:44","modified_gmt":"2024 ÎåÒ»²è¹Ý¶ù-09-23T19:51:44","slug":"cryo-em-links-resources","status":"publish","type":"page","link":"https:\/\/www.vanderbilt.edu\/csb\/facilities\/cryo-electron-microscopy\/cryo-em-links-resources\/","title":{"rendered":"Cryo-EM Links & Resources"},"content":{"rendered":"

Below are links to serve as a starting points for EM and the Cryo-EM world.\u00a0 Don’t hesitate to Contact Us<\/a> with questions.<\/h3>\n

Access Internal Documents & Resources here<\/a>, VUNetID protected<\/p>\n

Set up an account for ACCRE and SBGrid here<\/a>, VUNetID protected<\/p>\n

General Information<\/h4>\n

Collaborative Computational Project for Electron Cryo-Microscopy<\/a>\u00a0–\u00a0 Medial Research Council<\/p>\n

Getting Started in Cryo-EM<\/a>\u00a0– Lecture videos from Caltech<\/p>\n

Beginners Guide to TEM<\/a>\u00a0– by John Rodenburg<\/p>\n

CryoEM101<\/a>\u00a0– Workflow tutorial from University of Utah<\/p>\n

Cryo-EM Principles<\/a> – Yale University, lectures and reading<\/p>\n

MyScope TEM Introduction<\/a>\u00a0– Australian Microscopy & Microanalysis Research Facility<\/p>\n

Cryo-ET and Subtomogram Averaging<\/a> – Methods in Enzymology chapter by W. Wan & JAG Briggs<\/p>\n

SBGridTV<\/a>\u00a0–\u00a0Videos from events hosted by SBGrid on EM, crystallography, structure analysis, computational chemistry and more<\/p>\n

Electron Cryo-Microscopy Course 2017<\/a>\u00a0– Lectures from the MRC Laboratory of Molecular Biology<\/p>\n

Official 2017 Nobel Lectures in Physics and Chemistry at Stockholm University<\/a>\u00a0–\u00a0Lectures on the history and scientific accomplishments in the Cryo-EM field by Richard Henderson, Jacques Dubochet, and Joachim Frank<\/p>\n

SmarterEveryDay, Episode 300: <\/a>Featuring the Iverson lab’s bacterial flagellar motor & a tour of the CSB CryoEM Facility<\/p>\n

Tutorials & Techniques<\/h4>\n

Visualizing Proteins and Macromolecular Complexes by Negative Stain EM<\/a>\u00a0– Jove video<\/p>\n

Graphene Oxide Grid Preparation<\/a>\u00a0– by Thomas G. Martin, Scheres Group, Laboratory of Molecular Biology, Cambridge, UK<\/p>\n

EM-University<\/a>\u00a0– Workflow videos for using Vitrobot, clipping grids, and EPU<\/p>\n

RELION<\/a>\u00a0– Wiki & tutorial<\/p>\n

Software Tools for Molecular Microscopy<\/a>\u00a0– WikiBooks<\/p>\n

Tomography Software<\/a>\u00a0– NoskeWiki<\/p>\n

Electron Microscopy<\/a>\u00a0– YouTube playlist by SBGrid Consortium<\/p>\n

Cryo-EM Images & Common Features Gallery<\/a> – CryoEM101, University of Utah<\/p>\n

Electron Dose Rate Calculator<\/a> – SubAngstrom<\/p>\n

Cryo Sample Prep Complete Workflow:<\/a> Vitrobot (2-26 min), AutoGrid Clipping (26-36 min), Cassette Loading & Docking (36-43 min) – Caltech<\/p>\n

Meetings & Workshops<\/h4>\n

3DEM meetings and workshops<\/a>\u00a0– EMDataResource<\/p>\n

Simons Electron Microscopy Center Workshops and Courses<\/a>\u00a0– New York Structural Biology Center<\/p>\n

Workshops and Symposia at Outside Organizations<\/a>\u00a0– New York Structural Biology Center<\/p>\n

 <\/p>\n

Databases<\/h4>\n

Unified Data Source for 3-Dimensional Electron Microscopy<\/a>\u00a0– EMDataBank<\/p>\n

Electron Microscopy Data Bank<\/a>\u00a0– Protein Data Bank in Europe<\/p>\n

Electron Microscopy Public Image Archive<\/a>\u00a0– public resource for raw, 2D electron microscopy images<\/p>\n

 <\/p>\n

Mailing Lists<\/h4>\n

3DEM<\/a>\u00a0– Information for the 3DEM Community<\/p>\n

CCPEM<\/a>\u00a0– Email discussion lists for the UK Education and Research Communities<\/p>\n

 <\/p>\n","protected":false},"excerpt":{"rendered":"

Below are links to serve as a starting points for EM and the Cryo-EM world.\u00a0 Don’t hesitate to Contact Us with questions. Access Internal Documents & Resources here, VUNetID protected Set up an account for ACCRE and SBGrid here, VUNetID protected General Information Collaborative Computational Project for Electron Cryo-Microscopy\u00a0–\u00a0 Medial Research Council Getting Started in…<\/p>\n","protected":false},"author":1185,"featured_media":0,"parent":128,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"spay_email":""},"tags":[],"acf":[],"jetpack_sharing_enabled":true,"_links":{"self":[{"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/pages\/1223"}],"collection":[{"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/users\/1185"}],"replies":[{"embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/comments?post=1223"}],"version-history":[{"count":46,"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/pages\/1223\/revisions"}],"predecessor-version":[{"id":5635,"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/pages\/1223\/revisions\/5635"}],"up":[{"embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/pages\/128"}],"wp:attachment":[{"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/media?parent=1223"}],"wp:term":[{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.vanderbilt.edu\/csb\/wp-json\/wp\/v2\/tags?post=1223"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}