Research
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Cell Spatial Analysis in Crohn’s Disease: Unveiling Local Cell Arrangement Pattern with Graph-based Signatures
Shunxing Bao, Sichen Zhu, Vasantha L. Kolachala, Lucas W. Remedios, Yeonjoo Hwang, Yutong Sun, Ruining Deng, Can Cui, Rendong Zhang, Yike Li, Jia Li, Joseph T. Roland, Qi Liu, Ken S. Lau, Subra Kugathasan, Peng Qiu, Keith T. Wilson, Lori A. Coburn, Bennett A. Landman, and Yuankai Huo. “Cell… Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù
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High-performance Data Management for Whole Slide Image Analysis in Digital Pathology
Haoju Leng, Ruining Deng, Shunxing Bao, Dazheng Fang, Bryan A. Millis, Yucheng Tang, Haichun Yang, Xiao Wang, Yifan Peng, Lipeng Wan, and Yuankai Huo. “High-performance Data Management for Whole Slide Image Analysis in Digital Pathology.” Proceedings of SPIE Medical Imaging 2024 ÎåÒ»²è¹Ý¶ù: Digital and Computational Pathology, vol. 12933, 129330Y, 2024 ÎåÒ»²è¹Ý¶ù,… Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù
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Nucleus subtype classification using inter-modality learning
Lucas W. Remedios, Shunxing Bao, Samuel W. Remedios, Ho Hin Lee, Leon Cai, Thomas Li, Ruining Deng, Can Cui, Jia Li, Qi Liu, Ken S. Lau, Joseph T. Roland, Mary K. Washington, Lori A. Coburn, Keith T. Wilson, Yuankai Huo, and Bennett A. Landman. “Nucleus Subtype Classification Using Inter-modality… Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù
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Causal evidence for cholinergic stabilization of attractor landscape dynamics
Natasha L. Taylor, Christopher J. Whyte, Brandon R. Munn, Catie Chang, Joseph T. Lizier, David A. Leopold, Janita N. Turchi, Laszlo Zaborszky, Eli J. Müller, and James M. Shine. “Causal Evidence for Cholinergic Stabilization of Attractor Landscape Dynamics.” Cell Reports, vol. 43, no. 6, 114359 Research has shown that… Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù
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Leveraging sinusoidal representation networks to predict fMRI signals from EEG
Yamin Li, Ange Lou, Ziyuan Xu, Shiyu Wang, and Catie Chang. “Leveraging Sinusoidal Representation Networks to Predict fMRI Signals from EEG.” Proceedings of SPIE Medical Imaging 2024 ÎåÒ»²è¹Ý¶ù: Image Processing, vol. 12926, 129263A, 2024 ÎåÒ»²è¹Ý¶ù, San Diego, California Functional magnetic resonance imaging (fMRI) is a vital tool in neuroscience for observing… Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù
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Sex and age effects on gray matter volume trajectories in young children with prenatal alcohol exposure
Madison Long, Preeti Kar, Nils D. Forkert, Bennett A. Landman, W. Ben Gibbard, Christina Tortorelli, Carly A. McMorris, Yuankai Huo, and Catherine A. Lebel. “Sex and Age Effects on Gray Matter Volume Trajectories in Young Children with Prenatal Alcohol Exposure.” Frontiers in Human Neuroscience, vol. 18, 1379959, April 2024 ÎåÒ»²è¹Ý¶ù. … Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù
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Expanding gCNR into a clinically relevant measure of lesion detectability by considering size and spatial resolution
Siegfried Schlunk and Brett Byram. “Expanding gCNR into a Clinically Relevant Measure of Lesion Detectability by Considering Size and Spatial Resolution.” Proceedings of SPIE Medical Imaging 2024 ÎåÒ»²è¹Ý¶ù: Ultrasonic Imaging and Tomography, vol. 12932, 1293205, 2024 ÎåÒ»²è¹Ý¶ù, San Diego, California, Early image quality metrics were often developed with the goal of… Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù
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Spatiospectral image processing workflow considerations for advanced MR spectroscopy of the brain
Leon Y. Cai, Stephanie N. Del Tufo, Laura Barquero, Micah D’Archangel, Lanier Sachs, Laurie E. Cutting, Nicole Glaser, Simona Ghetti, Sarah S. Jaser, Adam W. Anderson, Lori C. Jordan, and Bennett A. Landman. “Spatiospectral Image Processing Workflow Considerations for Advanced MR Spectroscopy of the Brain.” Proceedings of SPIE Medical… Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù
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SpecReFlow: an algorithm for specular reflection restoration using flow-guided video completion
Haoli Yin, Rachel Eimen, Daniel Moyer, and Audrey K. Bowden. “SpecReFlow: An Algorithm for Specular Reflection Restoration Using Flow-guided Video Completion.” Journal of Medical Imaging, vol. 11, no. 2, 024012, April 2024 ÎåÒ»²è¹Ý¶ù. Specular reflections (SRs) are bright spots in endoscopy videos that can hinder a surgeon’s view and decision-making. Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù
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pyPheWAS Explorer: a visualization tool for exploratory analysis of phenome-disease associations
Cailey I. Kerley, Tin Q. Nguyen, Karthik Ramadass, Laurie E. Cutting, Bennett A. Landman, and Matthew Berger. “pyPheWAS Explorer: A Visualization Tool for Exploratory Analysis of Phenome-Disease Associations.” JAMIA Open, vol. 6, no. 1, 2023, Objective: This study aims to provide an easy-to-use tool for visualizing phenome-wide association studies… Read MoreJun. 20, 2024 ÎåÒ»²è¹Ý¶ù